nsv3898790
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:3,559,613
- Description:GRCh37/hg19 7p22.3-22.2(chr7:43360-3642604)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 20785 SVs from 125 studies. See in: genome view
Overlapping variant regions from other studies: 20825 SVs from 125 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3898790 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 43,360 | 3,602,972 |
| nsv3898790 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 43,360 | 3,642,604 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15149926 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000511648.2, VCV000443916.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15149926 | Remapped | Good | NC_000007.14:g.(?_ 43360)_(3602972_?) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 43,360 | 3,602,972 |
| nssv15149926 | Submitted genomic | NC_000007.13:g.(?_ 43360)_(3642604_?) del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 43,360 | 3,642,604 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15149926 | GRCh37: NC_000007.13:g.(?_43360)_(3642604_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000511648.2, VCV000443916.2 | 1 |