nsv3895314
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:64,203,275
- Description:
See descriptions for individual calls in download files
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 186134 SVs from 140 studies. See in: genome view
Overlapping variant regions from other studies: 182396 SVs from 140 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3895314 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 80,928 | 64,284,202 |
nsv3895314 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 61,569 | 62,915,555 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15161429 | copy number gain | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000512450.2, VCV000443339.2 | |
nssv15161862 | copy number gain | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000510832.2, VCV000443340.2 | 3 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv15161429 | Remapped | Good | NC_000020.11:g.(?_ 80928)_(64284202_? )dup | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 80,928 | 64,284,202 |
nssv15161862 | Remapped | Good | NC_000020.11:g.(?_ 80928)_(64284202_? )dup | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 80,928 | 64,284,202 |
nssv15161429 | Submitted genomic | NC_000020.10:g.(?_ 61569)_(62915555_? )dup | GRCh37 (hg19) | NC_000020.10 | Chr20 | 61,569 | 62,915,555 | ||
nssv15161862 | Submitted genomic | NC_000020.10:g.(?_ 61569)_(62915555_? )dup | GRCh37 (hg19) | NC_000020.10 | Chr20 | 61,569 | 62,915,555 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15161429 | GRCh37: NC_000020.10:g.(?_61569)_(62915555_?)dup | copy number gain | not provided | See cases | Pathogenic | ClinVar | RCV000512450.2, VCV000443339.2 | |
nssv15161862 | GRCh37: NC_000020.10:g.(?_61569)_(62915555_?)dup | copy number gain | not provided | See cases | Pathogenic | ClinVar | RCV000510832.2, VCV000443340.2 | 3 |