nsv3893671
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:84,639
- Description:GRCh37/hg19 7q11.23(chr7:77366523-77451161)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 246 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 247 SVs from 39 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3893671 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 77,737,206 | 77,821,844 |
| nsv3893671 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 77,366,523 | 77,451,161 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15154475 | copy number loss | Multiple | Multiple | not provided | Uncertain significance | ClinVar | RCV000682778.1, VCV000563289.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15154475 | Remapped | Perfect | NC_000007.14:g.(?_ 77737206)_(7782184 4_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 77,737,206 | 77,821,844 |
| nssv15154475 | Submitted genomic | NC_000007.13:g.(?_ 77366523)_(7745116 1_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 77,366,523 | 77,451,161 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15154475 | GRCh37: NC_000007.13:g.(?_77366523)_(77451161_?)del | copy number loss | germline | not provided | Uncertain significance | ClinVar | RCV000682778.1, VCV000563289.1 | 1 |