nsv3889886
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:10,195
- Description:GRCh37/hg19 4q32.1(chr4:156587887-156598081)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 169 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 169 SVs from 50 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3889886 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 155,666,735 | 155,676,929 |
nsv3889886 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 156,587,887 | 156,598,081 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15166153 | copy number loss | Multiple | Multiple | not provided | Benign | ClinVar | RCV000744070.2, VCV000607434.2 | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv15166153 | Remapped | Perfect | NC_000004.12:g.(?_ 155666735)_(155676 929_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,666,735 | 155,676,929 |
nssv15166153 | Submitted genomic | NC_000004.11:g.(?_ 156587887)_(156598 081_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 156,587,887 | 156,598,081 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15166153 | GRCh37: NC_000004.11:g.(?_156587887)_(156598081_?)del | copy number loss | unknown | not provided | Benign | ClinVar | RCV000744070.2, VCV000607434.2 | 1 |