nsv3889758
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,987
- Description:GRCh37/hg19 1q25.3(chr1:180750335-180755321)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 198 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 47 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3889758 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 180,781,199 | 180,786,185 |
| nsv3889758 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 180,750,335 | 180,755,321 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15157604 | copy number loss | Multiple | Multiple | not provided | Benign | ClinVar | RCV000736764.2, VCV000600128.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15157604 | Remapped | Perfect | NC_000001.11:g.(?_ 180781199)_(180786 185_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 180,781,199 | 180,786,185 |
| nssv15157604 | Submitted genomic | NC_000001.10:g.(?_ 180750335)_(180755 321_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 180,750,335 | 180,755,321 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15157604 | GRCh37: NC_000001.10:g.(?_180750335)_(180755321_?)del | copy number loss | unknown | not provided | Benign | ClinVar | RCV000736764.2, VCV000600128.2 | 1 |