nsv3887276
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:11,386
- Description:GRCh37/hg19 2p16.3(chr2:48851517-48862902)x0 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 270 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 270 SVs from 57 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3887276 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 48,624,378 | 48,635,763 |
| nsv3887276 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 48,851,517 | 48,862,902 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15160798 | copy number loss | Multiple | Multiple | not provided | Benign | ClinVar | RCV000740416.2, VCV000603780.2 | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15160798 | Remapped | Perfect | NC_000002.12:g.(?_ 48624378)_(4863576 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 48,624,378 | 48,635,763 |
| nssv15160798 | Submitted genomic | NC_000002.11:g.(?_ 48851517)_(4886290 2_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 48,851,517 | 48,862,902 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15160798 | GRCh37: NC_000002.11:g.(?_48851517)_(48862902_?)del | copy number loss | unknown | not provided | Benign | ClinVar | RCV000740416.2, VCV000603780.2 | 0 |