nsv3886069
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:21,798,760
- Description:GRCh37/hg19 6p25.3-22.3(chr6:156974-21955964)x3 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 63619 SVs from 131 studies. See in: genome view
Overlapping variant regions from other studies: 63609 SVs from 131 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3886069 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 156,974 | 21,955,733 |
| nsv3886069 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 156,974 | 21,955,964 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15154409 | copy number gain | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000682629.1, VCV000563140.1 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15154409 | Remapped | Good | NC_000006.12:g.(?_ 156974)_(21955733_ ?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 156,974 | 21,955,733 |
| nssv15154409 | Submitted genomic | NC_000006.11:g.(?_ 156974)_(21955964_ ?)dup | GRCh37 (hg19) | NC_000006.11 | Chr6 | 156,974 | 21,955,964 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15154409 | GRCh37: NC_000006.11:g.(?_156974)_(21955964_?)dup | copy number gain | germline | not provided | Pathogenic | ClinVar | RCV000682629.1, VCV000563140.1 | 3 |