nsv3884935
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:156,004,861
- Description:GRCh37/hg19 Xp22.33-q28(chrX:71267-155255792)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 234689 SVs from 119 studies. See in: genome view
Overlapping variant regions from other studies: 233822 SVs from 119 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3884935 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 21,267 | 156,026,127 |
| nsv3884935 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000023.10 | ChrX | 71,267 | 155,255,792 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161401 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000446197.3, VCV000394013.3 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15161401 | Remapped | Good | NC_000023.11:g.(?_ 21267)_(156026127_ ?)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 21,267 | 156,026,127 |
| nssv15161401 | Submitted genomic | NC_000023.10:g.(?_ 71267)_(155255792_ ?)del | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,267 | 155,255,792 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161401 | GRCh37: NC_000023.10:g.(?_71267)_(155255792_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000446197.3, VCV000394013.3 | 1 |