nsv3881239
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:384,911
- Description:GRCh37/hg19 4q26(chr4:115929629-116314539)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1601 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 1601 SVs from 98 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3881239 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 115,008,473 | 115,393,383 |
| nsv3881239 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 115,929,629 | 116,314,539 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15165381 | copy number loss | Multiple | Multiple | not provided | Benign | ClinVar | RCV000743929.2, VCV000607293.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15165381 | Remapped | Perfect | NC_000004.12:g.(?_ 115008473)_(115393 383_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 115,008,473 | 115,393,383 |
| nssv15165381 | Submitted genomic | NC_000004.11:g.(?_ 115929629)_(116314 539_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 115,929,629 | 116,314,539 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15165381 | GRCh37: NC_000004.11:g.(?_115929629)_(116314539_?)del | copy number loss | unknown | not provided | Benign | ClinVar | RCV000743929.2, VCV000607293.2 | 1 |