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dbVar

Database of genomic structural variation

nsv3881002

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:3,299

Description:GRCh37/hg19 6p22.2(chr6:25451717-25455015)x1 AND not provided

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 104 SVs from 26 studies. See in: genome view

Remapped(Score: Perfect):25,451,489-25,454,787

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3881002	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	25,451,489	25,454,787
nsv3881002	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	25,451,717	25,455,015

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv15166309	copy number loss	Multiple	Multiple	not provided	Benign	ClinVar	RCV000745543.2, VCV000608907.2	1

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15166309	Remapped	Perfect	NC_000006.12:g.(?_ 25451489)_(2545478 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	25,451,489	25,454,787
nssv15166309	Submitted genomic		NC_000006.11:g.(?_ 25451717)_(2545501 5_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	25,451,717	25,455,015

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv15166309	GRCh37: NC_000006.11:g.(?_25451717)_(25455015_?)del	copy number loss	unknown	not provided	Benign	ClinVar	RCV000745543.2, VCV000608907.2	1

No genotype data were submitted for this variant

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