nsv3880331
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:56,663
- Description:GRCh37/hg19 2p16.3(chr2:48707080-48763742)x4 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 320 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 320 SVs from 52 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3880331 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 48,479,941 | 48,536,603 |
| nsv3880331 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 48,707,080 | 48,763,742 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15174389 | copy number gain | Multiple | Multiple | not provided | Benign | ClinVar | RCV000752946.2, VCV000616310.2 | 4 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15174389 | Remapped | Perfect | NC_000002.12:g.(?_ 48479941)_(4853660 3_?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 48,479,941 | 48,536,603 |
| nssv15174389 | Submitted genomic | NC_000002.11:g.(?_ 48707080)_(4876374 2_?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 48,707,080 | 48,763,742 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15174389 | GRCh37: NC_000002.11:g.(?_48707080)_(48763742_?)dup | copy number gain | unknown | not provided | Benign | ClinVar | RCV000752946.2, VCV000616310.2 | 4 |