nsv3878033
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1,683,259
- Description:GRCh37/hg19 2q12.1-12.2(chr2:104995799-106679055)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3627 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 3627 SVs from 93 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3878033 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 104,379,341 | 106,062,599 |
| nsv3878033 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 104,995,799 | 106,679,055 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15152696 | copy number loss | Multiple | Multiple | not provided | Likely pathogenic | ClinVar | RCV000682137.1, VCV000562648.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15152696 | Remapped | Perfect | NC_000002.12:g.(?_ 104379341)_(106062 599_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 104,379,341 | 106,062,599 |
| nssv15152696 | Submitted genomic | NC_000002.11:g.(?_ 104995799)_(106679 055_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 104,995,799 | 106,679,055 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15152696 | GRCh37: NC_000002.11:g.(?_104995799)_(106679055_?)del | copy number loss | germline | not provided | Likely pathogenic | ClinVar | RCV000682137.1, VCV000562648.1 | 1 |