nsv3876227
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:17,600,605
- Description:GRCh37/hg19 2q11.1-13(chr2:96353030-114045463)x3 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 39182 SVs from 137 studies. See in: genome view
Overlapping variant regions from other studies: 39205 SVs from 137 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3876227 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 95,687,282 | 113,287,886 |
| nsv3876227 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 96,353,030 | 114,045,463 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15152720 | copy number gain | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000682168.1, VCV000562679.1 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15152720 | Remapped | Good | NC_000002.12:g.(?_ 95687282)_(1132878 86_?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 95,687,282 | 113,287,886 |
| nssv15152720 | Submitted genomic | NC_000002.11:g.(?_ 96353030)_(1140454 63_?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 96,353,030 | 114,045,463 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15152720 | GRCh37: NC_000002.11:g.(?_96353030)_(114045463_?)dup | copy number gain | germline | not provided | Pathogenic | ClinVar | RCV000682168.1, VCV000562679.1 | 3 |