nsv3871756
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:411,839
- Description:GRCh37/hg19 1q23.1(chr1:158489545-158901383)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1652 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 1656 SVs from 93 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3871756 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 158,519,755 | 158,931,593 |
| nsv3871756 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 158,489,545 | 158,901,383 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15153318 | copy number loss | Multiple | Multiple | not provided | Uncertain significance | ClinVar | RCV000684663.1, VCV000565188.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15153318 | Remapped | Perfect | NC_000001.11:g.(?_ 158519755)_(158931 593_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 158,519,755 | 158,931,593 |
| nssv15153318 | Submitted genomic | NC_000001.10:g.(?_ 158489545)_(158901 383_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 158,489,545 | 158,901,383 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15153318 | GRCh37: NC_000001.10:g.(?_158489545)_(158901383_?)del | copy number loss | germline | not provided | Uncertain significance | ClinVar | RCV000684663.1, VCV000565188.1 | 1 |