nsv3416452
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 449 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 450 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3416452 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nsv3416452 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14795628 | sva insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
| nssv14797258 | sva insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
| nssv14799151 | sva insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
| nssv14799471 | sva insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
| nssv14799900 | sva insertion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
| nssv14801668 | sva insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
| nssv14802086 | sva insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14802251 | sva insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
| nssv14804463 | sva insertion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
| nssv14805787 | sva insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
| nssv14807692 | sva insertion | SAMN05181962 | Sequencing | de novo and local sequence assembly | 23,563 |
| nssv14807832 | sva insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
| nssv14810249 | sva insertion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
| nssv14811380 | sva insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14795628 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14797258 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14799151 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14799471 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14799900 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14801668 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14802086 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14802251 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14804463 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14805787 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14807692 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14807832 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14810249 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14811380 | Submitted genomic | NC_000023.11:g.169 64941_16964942ins1 26 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,964,941 | 16,964,941 | ||
| nssv14795628 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14797258 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14799151 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14799471 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14799900 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14801668 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14802086 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14802251 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14804463 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14805787 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14807692 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14807832 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14810249 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |
| nssv14811380 | Remapped | Perfect | NC_000023.10:g.169 83064_16983065ins1 26NC_000023.10:g.1 6983064_16983065in s126 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,983,064 | 16,983,064 |