nsv3360835
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,076
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 464 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 464 SVs from 84 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3360835 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nsv3360835 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14672700 | deletion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
| nssv14673184 | deletion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
| nssv14674291 | deletion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14675598 | deletion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
| nssv14679832 | deletion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
| nssv14679865 | deletion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
| nssv14683010 | deletion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
| nssv14684522 | deletion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
| nssv14689440 | deletion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
| nssv14689597 | deletion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14672700 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14673184 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14674291 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14675598 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14679832 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14679865 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14683010 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14684522 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14689440 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14689597 | Submitted genomic | NC_000003.12:g.193 157541_193167616de l | GRCh38 (hg38) | NC_000003.12 | Chr3 | 193,157,541 | 193,167,616 | ||
| nssv14672700 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14673184 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14674291 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14675598 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14679832 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14679865 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14683010 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14684522 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14689440 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |
| nssv14689597 | Remapped | Perfect | NC_000003.11:g.192 875330_192885405de lNC_000003.11:g.19 2875330_192885405d el | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,330 | 192,885,405 |