nsv2043574
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:36
- Description:MOTIF=[AC],NS=[301],REF=[18.0],RL=[36],RPA=[15
.0,16.0,17.0,19.0,20.0,21.0,22.0],RU=[AC],QUAL=[74579.4] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 138 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Overlapping variant regions from other studies: 138 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2043574 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nsv2043574 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nsv2043574 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10969830 | short tandem repeat | (AC) 20 | Sequencing | Genotyping |
| nssv10969831 | short tandem repeat | (AC) 22 | Sequencing | Genotyping |
| nssv10969832 | short tandem repeat | (AC) 16 | Sequencing | Genotyping |
| nssv10969833 | short tandem repeat | (AC) 17 | Sequencing | Genotyping |
| nssv10969834 | short tandem repeat | (AC) 19 | Sequencing | Genotyping |
| nssv10969835 | short tandem repeat | (AC) 21 | Sequencing | Genotyping |
| nssv10969836 | short tandem repeat | (AC) 15 | Sequencing | Genotyping |
| nssv10969837 | short tandem repeat | (AC) 18 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10969830 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969831 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969832 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969833 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969834 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969835 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969836 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969837 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003571033.2 | Chr2|NW_00 3571033.2 | 61,350 | 61,385 |
| nssv10969830 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969831 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969832 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969833 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969834 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969835 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969836 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969837 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 148,989,338 | 148,989,373 |
| nssv10969830 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 | ||
| nssv10969831 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 | ||
| nssv10969832 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 | ||
| nssv10969833 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 | ||
| nssv10969834 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 | ||
| nssv10969835 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 | ||
| nssv10969836 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 | ||
| nssv10969837 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 149,845,852 | 149,845,887 |