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dbVar

Database of genomic structural variation

nsv1958877

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:21

Description:MOTIF=[TCC],NS=[300],REF=[7.0],RL=[21],RPA=[],
RU=[TCC],QUAL=[244899]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 110 SVs from 21 studies. See in: genome view

Remapped(Score: Perfect):40,423,497-40,423,517

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1958877	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	40,423,497	40,423,517
nsv1958877	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	40,929,404	40,929,424

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv10682741	short tandem repeat	(TCC) 7 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv10682741	Remapped	Perfect	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,423,497	40,423,517
nssv10682741	Submitted genomic		GRCh37 (hg19)		NC_000019.9	Chr19	40,929,404	40,929,424

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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