nsv1664347
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:15
- Description:MOTIF=[A],NS=[301],REF=[15.0],RL=[15],RPA=[11.
0,13.0,14.0,16.0,17.0],RU=[A],QUAL=[77036.1] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 83 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 83 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1664347 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 111,364,347 | 111,364,361 |
| nsv1664347 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 111,802,151 | 111,802,165 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9655480 | short tandem repeat | (A) 14 | Sequencing | Genotyping |
| nssv9655481 | short tandem repeat | (A) 16 | Sequencing | Genotyping |
| nssv9655482 | short tandem repeat | (A) 13 | Sequencing | Genotyping |
| nssv9655483 | short tandem repeat | (A) 11 | Sequencing | Genotyping |
| nssv9655484 | short tandem repeat | (A) 17 | Sequencing | Genotyping |
| nssv9655485 | short tandem repeat | (A) 15 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9655480 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 111,364,347 | 111,364,361 |
| nssv9655481 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 111,364,347 | 111,364,361 |
| nssv9655482 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 111,364,347 | 111,364,361 |
| nssv9655483 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 111,364,347 | 111,364,361 |
| nssv9655484 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 111,364,347 | 111,364,361 |
| nssv9655485 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 111,364,347 | 111,364,361 |
| nssv9655480 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 111,802,151 | 111,802,165 | ||
| nssv9655481 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 111,802,151 | 111,802,165 | ||
| nssv9655482 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 111,802,151 | 111,802,165 | ||
| nssv9655483 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 111,802,151 | 111,802,165 | ||
| nssv9655484 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 111,802,151 | 111,802,165 | ||
| nssv9655485 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 111,802,151 | 111,802,165 |