nsv1588175
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14
- Description:MOTIF=[T],NS=[301],REF=[14.0],RL=[14],RPA=[13.
0,15.0],RU=[T],QUAL=[127184] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 63 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 63 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1588175 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 61,794,344 | 61,794,357 |
| nsv1588175 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 61,561,816 | 61,561,829 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9348621 | short tandem repeat | (T) 13 | Sequencing | Genotyping |
| nssv9348622 | short tandem repeat | (T) 15 | Sequencing | Genotyping |
| nssv9348623 | short tandem repeat | (T) 14 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9348621 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 61,794,344 | 61,794,357 |
| nssv9348622 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 61,794,344 | 61,794,357 |
| nssv9348623 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 61,794,344 | 61,794,357 |
| nssv9348621 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,561,816 | 61,561,829 | ||
| nssv9348622 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,561,816 | 61,561,829 | ||
| nssv9348623 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,561,816 | 61,561,829 |