nsv1586386
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:24
- Description:MOTIF=[AC],NS=[301],REF=[12.0],RL=[24],RPA=[10
.0,11.0,13.0,14.0,15.0,16.0,17.0],RU=[AC],QUAL=[116510] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 55 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 55 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1586386 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nsv1586386 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9347807 | short tandem repeat | (AC) 13 | Sequencing | Genotyping |
| nssv9347808 | short tandem repeat | (AC) 14 | Sequencing | Genotyping |
| nssv9347809 | short tandem repeat | (AC) 15 | Sequencing | Genotyping |
| nssv9347810 | short tandem repeat | (AC) 16 | Sequencing | Genotyping |
| nssv9347811 | short tandem repeat | (AC) 17 | Sequencing | Genotyping |
| nssv9347812 | short tandem repeat | (AC) 11 | Sequencing | Genotyping |
| nssv9347813 | short tandem repeat | (AC) 10 | Sequencing | Genotyping |
| nssv9347814 | short tandem repeat | (AC) 12 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9347807 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347808 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347809 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347810 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347811 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347812 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347813 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347814 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,188,595 | 62,188,618 |
| nssv9347807 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 | ||
| nssv9347808 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 | ||
| nssv9347809 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 | ||
| nssv9347810 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 | ||
| nssv9347811 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 | ||
| nssv9347812 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 | ||
| nssv9347813 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 | ||
| nssv9347814 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,956,067 | 61,956,090 |