nsv1496338
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:52
- Description:MOTIF=[CCTT],NS=[301],REF=[13.0],RL=[52],RPA=[
8.5],RU=[CCTT],QUAL=[156588] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 125 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 125 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1496338 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 82,978,126 | 82,978,177 |
| nsv1496338 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 83,443,809 | 83,443,860 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv8792154 | short tandem repeat | (CCTT) 8.5 | Sequencing | Genotyping |
| nssv8792155 | short tandem repeat | (CCTT) 13 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv8792154 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 82,978,126 | 82,978,177 |
| nssv8792155 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 82,978,126 | 82,978,177 |
| nssv8792154 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 83,443,809 | 83,443,860 | ||
| nssv8792155 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 83,443,809 | 83,443,860 |