nsv1161039
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:139,617
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1671 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 1671 SVs from 81 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv1161039 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 103,621,165 | 103,635,416 | 103,725,600 | 103,760,781 |
| nsv1161039 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 104,163,787 | 104,178,038 | 104,268,222 | 104,303,403 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv4028590 | duplication | SNP array | Probe signal intensity | 4 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv4028590 | Remapped | Perfect | NC_000001.11:g.(10 3621165_103635416) _(103725600_103760 781)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,621,165 | 103,635,416 | 103,725,600 | 103,760,781 |
| nssv4028590 | Submitted genomic | NC_000001.10:g.(10 4163787_104178038) _(104268222_104303 403)dup | GRCh37 (hg19) | NC_000001.10 | Chr1 | 104,163,787 | 104,178,038 | 104,268,222 | 104,303,403 |