nsv1021906
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,983,829
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 43124 SVs from 137 studies. See in: genome view
Overlapping variant regions from other studies: 43135 SVs from 137 studies. See in: genome view
Overlapping variant regions from other studies: 12391 SVs from 41 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1021906 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 178,549,208 | 189,533,036 |
| nsv1021906 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 179,470,362 | 190,454,190 |
| nsv1021906 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 179,707,356 | 190,691,184 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3445770 | copy number loss | 9862168 | Oligo aCGH | Probe signal intensity | nssv3455962, nssv3458021 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3445770 | Remapped | Perfect | NC_000004.12:g.(?_ 178549208)_(189533 036_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 178,549,208 | 189,533,036 |
| nssv3445770 | Remapped | Perfect | NC_000004.11:g.(?_ 179470362)_(190454 190_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 179,470,362 | 190,454,190 |
| nssv3445770 | Submitted genomic | NC_000004.10:g.(?_ 179707356)_(190691 184_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 179,707,356 | 190,691,184 |