nsv1018322
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:63,892
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 544 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 219 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 544 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 145 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1018322 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nsv1018322 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nsv1018322 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nsv1018322 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3654767 | copy number loss | SNP array | Probe signal intensity |
| nssv3654768 | copy number loss | SNP array | Probe signal intensity |
| nssv3654769 | copy number loss | SNP array | Probe signal intensity |
| nssv3654770 | copy number loss | SNP array | Probe signal intensity |
| nssv3654771 | copy number loss | SNP array | Probe signal intensity |
| nssv3654772 | copy number loss | SNP array | Probe signal intensity |
| nssv3749021 | copy number loss | SNP array | Probe signal intensity |
| nssv3749022 | copy number loss | SNP array | Probe signal intensity |
| nssv3749023 | copy number loss | SNP array | Probe signal intensity |
| nssv3749024 | copy number loss | SNP array | Probe signal intensity |
| nssv3749025 | copy number loss | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3654767 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3654768 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3654769 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3654770 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3654771 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3654772 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3749021 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3749022 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3749023 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3749024 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3749025 | Remapped | Pass | NW_018654713.1:g.( ?_1)_(41643_?)del | GRCh38.p12 | Second Pass | NW_018654713.1 | Chr6|NW_01 8654713.1 | 1 | 41,643 |
| nssv3654767 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3654768 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3654769 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3654770 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3654771 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3654772 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3749021 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3749022 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3749023 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3749024 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3749025 | Remapped | Perfect | NC_000006.12:g.(?_ 10466868)_(1053075 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 10,466,868 | 10,530,759 |
| nssv3654767 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3654768 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3654769 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3654770 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3654771 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3654772 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3749021 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3749022 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3749023 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3749024 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3749025 | Remapped | Perfect | NC_000006.11:g.(?_ 10467101)_(1053099 2_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 10,467,101 | 10,530,992 |
| nssv3654767 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3654768 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3654769 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3654770 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3654771 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3654772 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3749021 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3749022 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3749023 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3749024 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 | ||
| nssv3749025 | Submitted genomic | NC_000006.10:g.(?_ 10575087)_(1063897 8_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 10,575,087 | 10,638,978 |