nsv1001454
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:77,894
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 338 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 341 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 106 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1001454 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 169,418,143 | 169,496,036 |
| nsv1001454 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 169,387,381 | 169,465,274 |
| nsv1001454 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 167,654,005 | 167,731,898 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3704815 | copy number gain | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3704815 | Remapped | Perfect | NC_000001.11:g.(?_ 169418143)_(169496 036_?)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,418,143 | 169,496,036 |
| nssv3704815 | Remapped | Perfect | NC_000001.10:g.(?_ 169387381)_(169465 274_?)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,387,381 | 169,465,274 |
| nssv3704815 | Submitted genomic | NC_000001.9:g.(?_1 67654005)_(1677318 98_?)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,654,005 | 167,731,898 |