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dbVar

Database of genomic structural variation

nsv871113

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:772,105

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1650 SVs from 75 studies. See in: genome view

Remapped(Score: Pass):10,001-782,105

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv871113	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	10,001	10,001	782,105	782,105
nsv871113	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	10,001	10,001	717,485	717,485
nsv871113	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	1	10,004	696,231	707,348

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1601260	copy number gain	IS30771	SNP array	SNP genotyping analysis	20
nssv1601261	copy number gain	IS41043	SNP array	SNP genotyping analysis	96

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1601260	Remapped	Pass	NC_000001.11:g.(10 001_10001)_(782105 _782105)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	10,001	10,001	782,105	782,105
nssv1601261	Remapped	Pass	NC_000001.11:g.(10 001_10001)_(782105 _782105)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	10,001	10,001	782,105	782,105
nssv1601260	Remapped	Good	NC_000001.10:g.(10 001_10001)_(717485 _717485)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	10,001	10,001	717,485	717,485
nssv1601261	Remapped	Good	NC_000001.10:g.(10 001_10001)_(717485 _717485)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	10,001	10,001	717,485	717,485
nssv1601260	Submitted genomic		NC_000001.9:g.(1_1 0004)_(696231_7073 48)dup	NCBI36 (hg18)		NC_000001.9	Chr1	1	10,004	696,231	707,348
nssv1601261	Submitted genomic		NC_000001.9:g.(1_1 0004)_(696231_7073 48)dup	NCBI36 (hg18)		NC_000001.9	Chr1	1	10,004	696,231	707,348

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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