nsv3872727
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:124,934,102
- Description:GRCh37/hg19 Xp21.2-q28(chrX:31088082-155233731)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 173906 SVs from 116 studies. See in: genome view
Overlapping variant regions from other studies: 173678 SVs from 116 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3872727 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 31,069,965 | 156,004,066 |
| nsv3872727 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000023.10 | ChrX | 31,088,082 | 155,233,731 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161420 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000511413.2, VCV000443504.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15161420 | Remapped | Good | NC_000023.11:g.(?_ 31069965)_(1560040 66_?)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 31,069,965 | 156,004,066 |
| nssv15161420 | Submitted genomic | NC_000023.10:g.(?_ 31088082)_(1552337 31_?)del | GRCh37 (hg19) | NC_000023.10 | ChrX | 31,088,082 | 155,233,731 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161420 | GRCh37: NC_000023.10:g.(?_31088082)_(155233731_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000511413.2, VCV000443504.2 | 1 |