nsv3889409
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1,866,665
- Description:GRCh37/hg19 5q35.2-35.3(chr5:175570678-177437340)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 6499 SVs from 113 studies. See in: genome view
Overlapping variant regions from other studies: 6499 SVs from 113 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3889409 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 176,143,675 | 178,010,339 |
| nsv3889409 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 175,570,678 | 177,437,340 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15152151 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000512405.2, VCV000443960.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15152151 | Remapped | Perfect | NC_000005.10:g.(?_ 176143675)_(178010 339_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 176,143,675 | 178,010,339 |
| nssv15152151 | Submitted genomic | NC_000005.9:g.(?_1 75570678)_(1774373 40_?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 175,570,678 | 177,437,340 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15152151 | GRCh37: NC_000005.9:g.(?_175570678)_(177437340_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000512405.2, VCV000443960.2 | 1 |