nsv3910919
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38, NCBI36
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:3,407,633
- Description:
See descriptions for individual calls in download files
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 12153 SVs from 132 studies. See in: genome view
Overlapping variant regions from other studies: 11412 SVs from 133 studies. See in: genome view
Overlapping variant regions from other studies: 3302 SVs from 36 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nsv3910919 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000022.11 | Chr22 | 16,916,608 | 20,324,240 |
| nsv3910919 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000022.10 | Chr22 | 17,397,498 | 20,311,763 |
| nsv3910919 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000022.9 | Chr22 | 15,777,498 | 18,691,763 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15132068 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000050859.4, VCV000057203.1 | 1 |
| nssv15132295 | copy number gain | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000050858.4, VCV000057202.1 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nssv15132068 | Submitted genomic | NC_000022.11:g.(?_ 16916608)_(2032424 0_?)del | GRCh38 (hg38) | NC_000022.11 | Chr22 | 16,916,608 | 20,324,240 |
| nssv15132295 | Submitted genomic | NC_000022.11:g.(?_ 16916608)_(2032424 0_?)dup | GRCh38 (hg38) | NC_000022.11 | Chr22 | 16,916,608 | 20,324,240 |
| nssv15132068 | Submitted genomic | NC_000022.10:g.(?_ 17397498)_(2031176 3_?)del | GRCh37 (hg19) | NC_000022.10 | Chr22 | 17,397,498 | 20,311,763 |
| nssv15132295 | Submitted genomic | NC_000022.10:g.(?_ 17397498)_(2031176 3_?)dup | GRCh37 (hg19) | NC_000022.10 | Chr22 | 17,397,498 | 20,311,763 |
| nssv15132068 | Submitted genomic | NC_000022.9:g.(?_1 5777498)_(18691763 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 15,777,498 | 18,691,763 |
| nssv15132295 | Submitted genomic | NC_000022.9:g.(?_1 5777498)_(18691763 _?)dup | NCBI36 (hg18) | NC_000022.9 | Chr22 | 15,777,498 | 18,691,763 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15132068 | GRCh37: NC_000022.10:g.(?_17397498)_(20311763_?)del, GRCh38: NC_000022.11:g.(?_16916608)_(20324240_?)del, NCBI36: NC_000022.9:g.(?_15777498)_(18691763_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000050859.4, VCV000057203.1 | 1 |
| nssv15132295 | GRCh37: NC_000022.10:g.(?_17397498)_(20311763_?)dup, GRCh38: NC_000022.11:g.(?_16916608)_(20324240_?)dup, NCBI36: NC_000022.9:g.(?_15777498)_(18691763_?)dup | copy number gain | not provided | See cases | Pathogenic | ClinVar | RCV000050858.4, VCV000057202.1 | 3 |