Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv3857202

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:25,045

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 534 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):28,765,257-28,791,301

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3857202	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	28,765,757 (-500, +0)	28,790,801 (-0, +500)
esv3857202	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000009.11	Chr9	28,765,755 (-500, +0)	28,790,799 (-0, +500)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv21524769	deletion	HG00326	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,173

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv21524769	Remapped	Perfect	NC_000009.12:g.(28 765257_28765757)_( 28790801_28791301) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	28,765,757 (-500, +0)	28,790,801 (-0, +500)
essv21524769	Submitted genomic		NC_000009.11:g.(28 765255_28765755)_( 28790799_28791299) del	GRCh37 (hg19)		NC_000009.11	Chr9	28,765,755 (-500, +0)	28,790,799 (-0, +500)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

You are here: NCBI