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dbVar

Database of genomic structural variation

esv3824902

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:116,340

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 509 SVs from 70 studies. See in: genome view

Remapped(Score: Perfect):76,644,535-76,760,881

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3824902	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	76,644,538 (-3, +4)	76,760,877 (-3, +4)
esv3824902	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	76,871,664 (-3, +4)	76,988,003 (-3, +4)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv17719809	deletion	HG01840	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,582

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv17719809	Remapped	Perfect	NC_000002.12:g.(76 644535_76644542)_( 76760874_76760881) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	76,644,538 (-3, +4)	76,760,877 (-3, +4)
essv17719809	Submitted genomic		NC_000002.11:g.(76 871661_76871668)_( 76988000_76988007) del	GRCh37 (hg19)		NC_000002.11	Chr2	76,871,664 (-3, +4)	76,988,003 (-3, +4)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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