esv2763663
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:128,333
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2411 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 2411 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 648 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763663 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 14,790,826 | 14,919,158 |
| esv2763663 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000020.10 | Chr20 | 14,771,472 | 14,899,804 |
| esv2763663 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000020.9 | Chr20 | 14,719,472 | 14,847,804 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7004014 | copy number loss | SW_0638 | SNP array | SNP genotyping analysis | 42 |
| essv7004015 | copy number loss | SW_1211 | SNP array | SNP genotyping analysis | 28 |
| essv7004016 | copy number loss | SW_1253 | SNP array | SNP genotyping analysis | 31 |
| essv7004017 | copy number loss | SW_0029 | SNP array | SNP genotyping analysis | 42 |
| essv7004018 | copy number loss | SW_0032 | SNP array | SNP genotyping analysis | 58 |
| essv7004019 | copy number loss | SW_0115 | SNP array | SNP genotyping analysis | 32 |
| essv7004020 | copy number loss | SW_0142 | SNP array | SNP genotyping analysis | 27 |
| essv7004021 | copy number loss | SW_0822 | SNP array | SNP genotyping analysis | 46 |
| essv7004023 | copy number loss | SW_0885 | SNP array | SNP genotyping analysis | 50 |
| essv7004024 | copy number loss | SW_1413 | SNP array | SNP genotyping analysis | 35 |
| essv7004025 | copy number loss | SW_1483 | SNP array | SNP genotyping analysis | 25 |
| essv7004026 | copy number loss | SW_1508 | SNP array | SNP genotyping analysis | 21 |
| essv7004027 | copy number loss | SW_1455 | SNP array | SNP genotyping analysis | 39 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7004014 | Remapped | Perfect | NC_000020.11:g.(?_ 14790826)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,790,826 | 14,843,259 |
| essv7004015 | Remapped | Perfect | NC_000020.11:g.(?_ 14790826)_(1485287 5_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,790,826 | 14,852,875 |
| essv7004016 | Remapped | Perfect | NC_000020.11:g.(?_ 14790826)_(1485287 5_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,790,826 | 14,852,875 |
| essv7004017 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004018 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004019 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004020 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004021 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004023 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004024 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004025 | Remapped | Perfect | NC_000020.11:g.(?_ 14801038)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,801,038 | 14,843,259 |
| essv7004026 | Remapped | Perfect | NC_000020.11:g.(?_ 14804435)_(1484325 9_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,804,435 | 14,843,259 |
| essv7004027 | Remapped | Perfect | NC_000020.11:g.(?_ 14835000)_(1491915 8_?)del | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 14,835,000 | 14,919,158 |
| essv7004014 | Remapped | Perfect | NC_000020.10:g.(?_ 14771472)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,771,472 | 14,823,905 |
| essv7004015 | Remapped | Perfect | NC_000020.10:g.(?_ 14771472)_(1483352 1_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,771,472 | 14,833,521 |
| essv7004016 | Remapped | Perfect | NC_000020.10:g.(?_ 14771472)_(1483352 1_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,771,472 | 14,833,521 |
| essv7004017 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004018 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004019 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004020 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004021 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004023 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004024 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004025 | Remapped | Perfect | NC_000020.10:g.(?_ 14781684)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,781,684 | 14,823,905 |
| essv7004026 | Remapped | Perfect | NC_000020.10:g.(?_ 14785081)_(1482390 5_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,785,081 | 14,823,905 |
| essv7004027 | Remapped | Perfect | NC_000020.10:g.(?_ 14815646)_(1489980 4_?)del | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 14,815,646 | 14,899,804 |
| essv7004014 | Submitted genomic | NC_000020.9:g.(?_1 4719472)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,719,472 | 14,771,905 | ||
| essv7004015 | Submitted genomic | NC_000020.9:g.(?_1 4719472)_(14781521 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,719,472 | 14,781,521 | ||
| essv7004016 | Submitted genomic | NC_000020.9:g.(?_1 4719472)_(14781521 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,719,472 | 14,781,521 | ||
| essv7004017 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004018 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004019 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004020 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004021 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004023 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004024 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004025 | Submitted genomic | NC_000020.9:g.(?_1 4729684)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,729,684 | 14,771,905 | ||
| essv7004026 | Submitted genomic | NC_000020.9:g.(?_1 4733081)_(14771905 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,733,081 | 14,771,905 | ||
| essv7004027 | Submitted genomic | NC_000020.9:g.(?_1 4763646)_(14847804 _?)del | NCBI36 (hg18) | NC_000020.9 | Chr20 | 14,763,646 | 14,847,804 |