estd1 (Redon et al. 2006)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Richard Redon
- Description:
- We have constructed a first-generation CNV map of the human genome through the study of 270 individuals from four populations with ancestry in Europe, Africa or Asia (the HapMap collection). DNA from these individuals was screened for CNV using two complementary technologies: single-nucleotide polymorphism (SNP) genotyping arrays, and clone-based comparative genomic hybridization. See Variant Summary counts for estd1 in dbVar Variant Summary.
- Publication(s):
- Redon et al. 2006
Detailed Information: Download 3340 Variant Regions, Download 25193 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI35 (hg17)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 237 | 2,334 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 247 | 1,091 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 222 | 1,015 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 231 | 2,073 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 193 | 1,742 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 216 | 1,871 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 196 | 1,082 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 167 | 1,441 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 164 | 923 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 167 | 1,092 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 189 | 1,340 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 120 | 653 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 105 | 307 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 101 | 679 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 112 | 1,286 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 127 | 1,606 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 82 | 1,267 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 75 | 162 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 82 | 725 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 71 | 589 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 33 | 166 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 65 | 669 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 114 | 400 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 14 | 156 | Remapped | NC_000024.10 |
| NT_187367.1 | Chr1|NT_187367.1 | 0 | 4 | Remapped | NT_187367.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 0 | 1 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 2 | 3 | Remapped | NT_187519.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 0 | 1 | Remapped | NT_187646.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 2 | 5 | Remapped | NW_003315906.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 2 | 4 | Remapped | NW_011332687.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 0 | 15 | Remapped | NW_012132914.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 0 | 4 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 17 | Remapped | NW_018654707.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 8 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 0 | 4 | Remapped | NT_187524.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 2 | 1 | Remapped | NT_187529.1 |
| NT_187530.1 | Chr2|NT_187530.1 | 1 | 2 | Remapped | NT_187530.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 8 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 0 | 4 | Remapped | NT_187648.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 2 | 10 | Remapped | NW_018654709.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 0 | 210 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 0 | 210 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 0 | 214 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 0 | 210 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 0 | 210 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 0 | 214 | Remapped | NT_187532.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 0 | 3 | Remapped | NT_187534.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 2 | 1 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 2 | 18 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 0 | 210 | Remapped | NT_187649.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 2 | 1 | Remapped | NW_009646198.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 2 | 2 | Remapped | NW_019805488.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 2 | 244 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 2 | 4 | Remapped | NT_167250.2 |
| NT_187543.1 | Chr4|NT_187543.1 | 0 | 1 | Remapped | NT_187543.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 0 | 1 | Remapped | NT_187650.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 3 | 83 | Remapped | NW_003315915.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 2 | 152 | Remapped | NT_187651.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 2 | 168 | Remapped | NW_003315917.2 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 2 | 35 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 3 | 4 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 18 | 553 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 17 | 347 | Remapped | NT_167247.2 |
| NT_167248.2 | Chr6|NT_167248.2 | 18 | 497 | Remapped | NT_167248.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 18 | 554 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 18 | 542 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 18 | 497 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 11 | 188 | Remapped | NT_167244.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 2 | 12 | Remapped | NT_187553.1 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 2 | 2 | Remapped | NW_009646200.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 3 | 3 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 3 | 28 | Remapped | NT_187558.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 6 | 55 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 0 | 1 | Remapped | NT_187563.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 3 | 28 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 0 | 90 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 2 | 24 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 3 | 4 | Remapped | NW_019805493.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 0 | 168 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 1 | Remapped | NT_187567.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 0 | 44 | Remapped | NT_187570.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 3 | 18 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 2 | 2 | Remapped | NT_187577.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 0 | 1 | Remapped | NW_017852931.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 2 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 9 | 61 | Remapped | NW_018654717.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 5 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 2 | 1 | Remapped | NW_003315929.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 0 | 163 | Remapped | NT_187681.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 2 | 2 | Remapped | NT_187585.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 3 | 7 | Remapped | NW_003315936.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 27 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 35 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 3 | 85 | Remapped | NT_187587.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 2 | 2 | Remapped | NW_003315940.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 2 | 8 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 2 | 2 | Remapped | NW_011332696.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 0 | 13 | Remapped | NT_187594.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 2 | 6 | Remapped | NW_011332699.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 0 | 3 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 2 | 2 | Remapped | NT_187601.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 0 | 14 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 2 | 51 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 0 | 2 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 0 | 4 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 0 | 19 | Remapped | NT_187603.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 2 | 3 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 2 | 41 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 0 | 18 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 2 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 2 | 71 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 3 | 34 | Remapped | NT_187607.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 2 | 1 | Remapped | NW_012132921.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 3 | 76 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 0 | 67 | Remapped | NT_187661.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 0 | 54 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 0 | 2 | Remapped | NT_187664.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 0 | 37 | Remapped | NT_167251.2 |
| NT_187384.1 | Chr17|NT_187384.1 | 0 | 4 | Remapped | NT_187384.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 0 | 2 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 11 | 357 | Remapped | NT_187614.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 2 | 1 | Remapped | NW_003315955.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 2 | 1 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 2 | 68 | Remapped | NW_017363819.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 6 | 121 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 5 | 43 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 4 | 20 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 4 | 20 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 4 | 20 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 5 | 75 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 4 | 20 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 5 | 21 | Remapped | NW_003571055.2 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 5 | 75 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 2 | 5 | Remapped | NW_009646206.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 2 | 10 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 2 | 12 | Remapped | NT_187624.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 62 | Remapped | NW_003315968.2 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 2 | 10 | Remapped | NW_015148969.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 2 | 33 | Remapped | NT_187631.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 5 | Remapped | NT_187633.1 |
| NT_187667.1 | ChrX|NT_187667.1 | 2 | 3 | Remapped | NT_187667.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 2 | 3 | Remapped | NT_187634.1 |
| NW_018654726.1 | ChrY|NW_018654726.1 | 0 | 2 | Remapped | NW_018654726.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 238 | 2,613 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 245 | 1,087 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 220 | 1,040 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 231 | 2,073 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 193 | 1,742 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 218 | 1,872 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 194 | 947 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 167 | 1,447 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 162 | 1,007 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 171 | 1,200 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 189 | 1,340 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 120 | 653 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 105 | 307 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 101 | 679 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 114 | 1,318 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 124 | 1,450 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 82 | 1,326 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 75 | 162 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 80 | 710 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 71 | 539 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 33 | 131 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 68 | 619 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 107 | 396 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 14 | 156 | Remapped | NC_000024.9 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 4 | 157 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 2 | 104 | Remapped | NW_003871056.3 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 3 | 2 | Remapped | NW_003571032.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 4 | 4 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 2 | 3 | Remapped | NW_003871059.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 2 | 4 | Remapped | NT_167250.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 3 | 83 | Remapped | NW_003315915.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 2 | 3 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 2 | 184 | Remapped | NW_003315917.2 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 0 | 47 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 18 | 497 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 11 | 169 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 18 | 542 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 18 | 553 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 17 | 347 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 18 | 539 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 18 | 554 | Remapped | NT_167249.1 |
| NW_003871063.1 | Chr6|NW_003871063.1 | 3 | 106 | Remapped | NW_003871063.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 1 | 1 | Remapped | NW_004070866.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 2 | 2 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 2 | 1 | Remapped | NW_003571038.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 6 | 55 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 3 | 29 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 0 | 12 | Remapped | NW_004775430.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 2 | 2 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 3 | 18 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 2 | 1 | Remapped | NW_004775431.1 |
| NW_003315928.1 | Chr9|NW_003315928.1 | 2 | 5 | Remapped | NW_003315928.1 |
| NW_003315929.1 | Chr9|NW_003315929.1 | 2 | 1 | Remapped | NW_003315929.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 0 | 8 | Remapped | NW_003871067.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 2 | 2 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 3 | 410 | Remapped | NW_003871068.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 0 | 2 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 2 | 1 | Remapped | NW_004775432.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 3 | 7 | Remapped | NW_003315936.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 2 | 2 | Remapped | NW_003315940.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 2 | 1 | Remapped | NW_003571050.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 0 | 3 | Remapped | NW_004166863.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 2 | 1 | Remapped | NW_003315944.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 1 | 107 | Remapped | NT_167251.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 0 | 6 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 4 | 441 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 1 | 6 | Remapped | NW_003315950.2 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 2 | 1 | Remapped | NW_003315955.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 0 | 31 | Remapped | NW_003871086.1 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 0 | 1 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 6 | 40 | Remapped | NW_003571053.2 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 0 | 14 | Remapped | NW_003571061.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 3 | 47 | Remapped | NW_004166865.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 0 | 17 | Remapped | NW_003571063.2 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 2 | 62 | Remapped | NW_003315968.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 2 | 2 | Remapped | NW_003871100.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 3 | 2 | Remapped | NW_003871103.3 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 3 | 17 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 2 | 2 | Remapped | NW_004070881.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 3 | 4 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 4 | 2 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 5 | 8 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 4 | 62 | Remapped | NW_004070888.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 7 | 15 | Remapped | NW_004070890.2 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 2 | 1 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 1 | 1 | Remapped | NW_004070893.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.8 | Chr1 | 238 | 2,613 | Submitted | NC_000001.8 |
| NC_000002.9 | Chr2 | 247 | 1,089 | Submitted | NC_000002.9 |
| NC_000003.9 | Chr3 | 220 | 1,040 | Submitted | NC_000003.9 |
| NC_000004.9 | Chr4 | 231 | 2,102 | Submitted | NC_000004.9 |
| NC_000005.8 | Chr5 | 193 | 1,742 | Submitted | NC_000005.8 |
| NC_000006.9 | Chr6 | 218 | 1,872 | Submitted | NC_000006.9 |
| NC_000007.11 | Chr7 | 194 | 950 | Submitted | NC_000007.11 |
| NC_000008.9 | Chr8 | 167 | 1,449 | Submitted | NC_000008.9 |
| NC_000009.9 | Chr9 | 164 | 1,062 | Submitted | NC_000009.9 |
| NC_000010.8 | Chr10 | 171 | 1,200 | Submitted | NC_000010.8 |
| NC_000011.8 | Chr11 | 189 | 1,340 | Submitted | NC_000011.8 |
| NC_000012.9 | Chr12 | 120 | 653 | Submitted | NC_000012.9 |
| NC_000013.9 | Chr13 | 105 | 307 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 101 | 679 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 114 | 1,331 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 124 | 1,450 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 84 | 1,493 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 75 | 162 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 83 | 771 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 71 | 539 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 33 | 131 | Submitted | NC_000021.7 |
| NC_000022.8 | Chr22 | 68 | 619 | Submitted | NC_000022.8 |
| NC_000023.8 | ChrX | 114 | 400 | Submitted | NC_000023.8 |
| NC_000024.7 | ChrY | 16 | 199 | Submitted | NC_000024.7 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 238 | 212 | 3 | 18 | 0 | 5 | 2,613 | 1,966 | 101 | 329 | 0 | 217 |
| NC_000002.9 | Chr2 | 247 | 226 | 9 | 11 | 0 | 1 | 1,089 | 1,008 | 11 | 69 | 0 | 1 |
| NC_000003.9 | Chr3 | 220 | 211 | 3 | 0 | 0 | 6 | 1,040 | 664 | 369 | 0 | 0 | 7 |
| NC_000004.9 | Chr4 | 231 | 208 | 8 | 8 | 0 | 7 | 2,102 | 1,867 | 10 | 106 | 29 | 90 |
| NC_000005.8 | Chr5 | 193 | 183 | 6 | 2 | 0 | 2 | 1,742 | 1,389 | 5 | 117 | 0 | 231 |
| NC_000006.9 | Chr6 | 218 | 191 | 6 | 2 | 0 | 19 | 1,872 | 1,241 | 75 | 1 | 0 | 555 |
| NC_000007.11 | Chr7 | 194 | 167 | 2 | 12 | 0 | 13 | 950 | 708 | 20 | 126 | 0 | 96 |
| NC_000008.9 | Chr8 | 167 | 140 | 16 | 4 | 0 | 7 | 1,449 | 1,009 | 156 | 265 | 0 | 19 |
| NC_000009.9 | Chr9 | 164 | 150 | 3 | 5 | 2 | 4 | 1,062 | 400 | 184 | 407 | 55 | 16 |
| NC_000010.8 | Chr10 | 171 | 155 | 3 | 6 | 0 | 7 | 1,200 | 656 | 6 | 123 | 0 | 415 |
| NC_000011.8 | Chr11 | 189 | 182 | 4 | 0 | 0 | 3 | 1,340 | 1,331 | 1 | 1 | 0 | 7 |
| NC_000012.9 | Chr12 | 120 | 113 | 0 | 3 | 0 | 4 | 653 | 648 | 0 | 2 | 0 | 3 |
| NC_000013.9 | Chr13 | 105 | 105 | 0 | 0 | 0 | 0 | 307 | 307 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 101 | 97 | 2 | 2 | 0 | 0 | 679 | 559 | 116 | 1 | 0 | 3 |
| NC_000015.8 | Chr15 | 114 | 102 | 3 | 7 | 0 | 2 | 1,331 | 832 | 61 | 424 | 13 | 1 |
| NC_000016.8 | Chr16 | 124 | 121 | 2 | 0 | 0 | 1 | 1,450 | 1,406 | 0 | 1 | 0 | 43 |
| NC_000017.9 | Chr17 | 84 | 58 | 9 | 7 | 2 | 8 | 1,493 | 488 | 380 | 207 | 5 | 413 |
| NC_000018.8 | Chr18 | 75 | 75 | 0 | 0 | 0 | 0 | 162 | 162 | 0 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 83 | 67 | 2 | 8 | 0 | 6 | 771 | 522 | 34 | 175 | 0 | 40 |
| NC_000020.9 | Chr20 | 71 | 69 | 0 | 2 | 0 | 0 | 539 | 507 | 0 | 10 | 0 | 22 |
| NC_000021.7 | Chr21 | 33 | 31 | 0 | 0 | 0 | 2 | 131 | 69 | 0 | 0 | 0 | 62 |
| NC_000022.8 | Chr22 | 68 | 63 | 5 | 0 | 0 | 0 | 619 | 607 | 10 | 2 | 0 | 0 |
| NC_000023.8 | ChrX | 114 | 69 | 4 | 8 | 2 | 31 | 400 | 279 | 2 | 5 | 1 | 113 |
| NC_000024.7 | ChrY | 16 | 14 | 0 | 0 | 2 | 0 | 199 | 156 | 0 | 0 | 43 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 238 | 199 | 9 | 18 | 1 | 11 | 2,613 | 1,589 | 270 | 333 | 222 | 199 |
| NC_000002.9 | Chr2 | 247 | 211 | 25 | 5 | 0 | 6 | 1,089 | 973 | 46 | 45 | 0 | 25 |
| NC_000003.9 | Chr3 | 220 | 197 | 17 | 0 | 0 | 6 | 1,040 | 616 | 160 | 0 | 26 | 238 |
| NC_000004.9 | Chr4 | 231 | 206 | 10 | 8 | 0 | 7 | 2,102 | 1,446 | 190 | 106 | 29 | 331 |
| NC_000005.8 | Chr5 | 193 | 174 | 12 | 0 | 0 | 7 | 1,742 | 1,400 | 17 | 116 | 0 | 209 |
| NC_000006.9 | Chr6 | 218 | 180 | 6 | 5 | 0 | 27 | 1,872 | 1,223 | 74 | 3 | 0 | 572 |
| NC_000007.11 | Chr7 | 194 | 159 | 13 | 9 | 0 | 13 | 950 | 577 | 110 | 38 | 15 | 210 |
| NC_000008.9 | Chr8 | 167 | 127 | 20 | 2 | 0 | 18 | 1,449 | 749 | 351 | 60 | 0 | 289 |
| NC_000009.9 | Chr9 | 164 | 149 | 4 | 7 | 0 | 4 | 1,062 | 364 | 355 | 186 | 70 | 87 |
| NC_000010.8 | Chr10 | 171 | 144 | 12 | 11 | 4 | 0 | 1,200 | 626 | 55 | 411 | 108 | 0 |
| NC_000011.8 | Chr11 | 189 | 168 | 14 | 0 | 0 | 7 | 1,340 | 1,125 | 14 | 2 | 0 | 199 |
| NC_000012.9 | Chr12 | 120 | 104 | 4 | 3 | 0 | 9 | 653 | 523 | 4 | 2 | 0 | 124 |
| NC_000013.9 | Chr13 | 105 | 103 | 2 | 0 | 0 | 0 | 307 | 286 | 6 | 2 | 0 | 13 |
| NC_000014.7 | Chr14 | 101 | 87 | 8 | 4 | 0 | 2 | 679 | 411 | 61 | 202 | 0 | 5 |
| NC_000015.8 | Chr15 | 114 | 94 | 4 | 10 | 0 | 6 | 1,331 | 725 | 36 | 468 | 3 | 99 |
| NC_000016.8 | Chr16 | 124 | 104 | 6 | 6 | 0 | 8 | 1,450 | 1,121 | 41 | 177 | 0 | 111 |
| NC_000017.9 | Chr17 | 84 | 51 | 11 | 3 | 2 | 17 | 1,493 | 285 | 510 | 117 | 162 | 419 |
| NC_000018.8 | Chr18 | 75 | 71 | 4 | 0 | 0 | 0 | 162 | 144 | 18 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 83 | 60 | 16 | 0 | 0 | 7 | 771 | 653 | 23 | 15 | 0 | 80 |
| NC_000020.9 | Chr20 | 71 | 58 | 7 | 2 | 0 | 4 | 539 | 487 | 20 | 10 | 0 | 22 |
| NC_000021.7 | Chr21 | 33 | 22 | 7 | 0 | 0 | 4 | 131 | 57 | 6 | 0 | 0 | 68 |
| NC_000022.8 | Chr22 | 68 | 48 | 8 | 7 | 1 | 4 | 619 | 491 | 20 | 62 | 2 | 44 |
| NC_000023.8 | ChrX | 114 | 68 | 32 | 12 | 0 | 2 | 400 | 241 | 79 | 77 | 0 | 3 |
| NC_000024.7 | ChrY | 16 | 12 | 2 | 0 | 2 | 0 | 199 | 104 | 50 | 0 | 43 | 2 |
Samplesets
Number of Samplesets: 1
- Name:
- Hapmap 270
- Description:
- Hapmap 270 samples
- Size:
- 270
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- Health
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| NA12812 | DNA | NA12812 | Male | Caucasian | Health | |
| NA07348 | DNA | NA07348 | Female | Caucasian | 45 Years | Health |
| NA18502 | DNA | NA18502 | Female | Health | ||
| NA11993 | DNA | NA11993 | Female | Caucasian | 80 Years | Health |
| NA12813 | DNA | NA12813 | Female | Caucasian | Health | |
| NA12761 | DNA | NA12761 | Female | Caucasian | Health | |
| NA12154 | DNA | NA12154 | Male | Caucasian | 92 Years | Health |
| NA12057 | DNA | NA12057 | Female | Caucasian | 75 Years | Health |
| NA10857 | DNA | NA10857 | Male | Caucasian | 47 Years | Health |
| NA11839 | DNA | NA11839 | Male | Caucasian | 67 Years | Health |
| NA12156 | DNA | NA12156 | Female | Caucasian | 81 Years | Health |
| NA11881 | DNA | NA11881 | Male | Caucasian | 62 Years | Health |
| NA11831 | DNA | NA11831 | Male | Caucasian | 73 Years | Health |
| NA06993 | DNA | NA06993 | Male | Caucasian | 74 Years | Health |
| NA10830 | DNA | NA10830 | Male | Caucasian | 66 Years | Health |
| NA10856 | DNA | NA10856 | Male | Caucasian | 46 Years | Health |
| NA07048 | DNA | NA07048 | Male | Caucasian | 43 Years | Health |
| NA12056 | DNA | NA12056 | Male | Caucasian | 79 Years | Health |
| NA12236 | DNA | NA12236 | Female | Caucasian | 86 Years | Health |
| NA12751 | DNA | NA12751 | Female | Caucasian | Health | |
| NA12155 | DNA | NA12155 | Male | Caucasian | 86 Years | Health |
| NA12146 | DNA | NA12146 | Male | Caucasian | 61 Years | Health |
| NA12872 | DNA | NA12872 | Male | Caucasian | Health | |
| NA12865 | DNA | NA12865 | Female | Caucasian | Health | |
| NA12249 | DNA | NA12249 | Female | Caucasian | 77 Years | Health |
| NA11830 | DNA | NA11830 | Female | Caucasian | 63 Years | Health |
| NA12892 | DNA | NA12892 | Female | Caucasian | Health | |
| NA12716 | DNA | NA12716 | Male | Caucasian | Health | |
| NA10859 | DNA | NA10859 | Female | Caucasian | 41 Years | Health |
| NA10838 | DNA | NA10838 | Male | Caucasian | 60 Years | Health |
| NA06991 | DNA | NA06991 | Female | Caucasian | 42 Years | Health |
| NA12760 | DNA | NA12760 | Male | Caucasian | Health | |
| NA12763 | DNA | NA12763 | Female | Caucasian | Health | |
| NA11995 | DNA | NA11995 | Female | Caucasian | 84 Years | Health |
| NA10831 | DNA | NA10831 | Female | Caucasian | 59 Years | Health |
| NA11829 | DNA | NA11829 | Male | Caucasian | 72 Years | Health |
| NA11992 | DNA | NA11992 | Male | Caucasian | 86 Years | Health |
| NA12815 | DNA | NA12815 | Female | Caucasian | Health | |
| NA12043 | DNA | NA12043 | Male | Caucasian | 74 Years | Health |
| NA12003 | DNA | NA12003 | Male | Caucasian | 97 Years | Health |
| NA18501 | DNA | NA18501 | Male | Health | ||
| NA07022 | DNA | NA07022 | Male | Caucasian | 63 Years | Health |
| NA10860 | DNA | NA10860 | Male | Caucasian | 50 Years | Health |
| NA06985 | DNA | NA06985 | Female | Caucasian | 69 Years | Health |
| NA18508 | DNA | NA18508 | Female | Health | ||
| NA18505 | DNA | NA18505 | Female | Health | ||
| NA12044 | DNA | NA12044 | Female | Caucasian | 70 Years | Health |
| NA18500 | DNA | NA18500 | Male | Health | ||
| NA12234 | DNA | NA12234 | Female | Caucasian | 74 Years | Health |
| NA12264 | DNA | NA12264 | Male | Caucasian | 72 Years | Health |
| NA12874 | DNA | NA12874 | Male | Caucasian | Health | |
| NA10851 | DNA | NA10851 | Male | Caucasian | 52 Years | Health |
| NA12145 | DNA | NA12145 | Female | Caucasian | 70 Years | Health |
| NA12752 | DNA | NA12752 | Male | Caucasian | Health | |
| NA07029 | DNA | NA07029 | Male | Caucasian | 47 Years | Health |
| NA12004 | DNA | NA12004 | Female | Caucasian | 92 Years | Health |
| NA07357 | DNA | NA07357 | Male | Caucasian | 69 Years | Health |
| NA06994 | DNA | NA06994 | Male | Caucasian | 68 Years | Health |
| NA12878 | DNA | NA12878 | Female | Caucasian | Health | |
| NA11840 | DNA | NA11840 | Female | Caucasian | 67 Years | Health |
| NA12864 | DNA | NA12864 | Male | Caucasian | Health | |
| NA18506 | DNA | NA18506 | Male | Health | ||
| NA07034 | DNA | NA07034 | Male | Caucasian | 71 Years | Health |
| NA12753 | DNA | NA12753 | Female | Caucasian | Health | |
| NA11994 | DNA | NA11994 | Male | Caucasian | 80 Years | Health |
| NA12248 | DNA | NA12248 | Male | Caucasian | 89 Years | Health |
| NA12005 | DNA | NA12005 | Male | Caucasian | 77 Years | Health |
| NA07345 | DNA | NA07345 | Female | Caucasian | 69 Years | Health |
| NA10847 | DNA | NA10847 | Female | Caucasian | 38 Years | Health |
| NA10839 | DNA | NA10839 | Female | Caucasian | 55 Years | Health |
| NA12762 | DNA | NA12762 | Male | Caucasian | Health | |
| NA12006 | DNA | NA12006 | Female | Caucasian | 75 Years | Health |
| NA12144 | DNA | NA12144 | Male | Caucasian | 71 Years | Health |
| NA12891 | DNA | NA12891 | Male | Caucasian | Health | |
| NA12814 | DNA | NA12814 | Male | Caucasian | Health | |
| NA12801 | DNA | NA12801 | Male | Caucasian | Health | |
| NA07055 | DNA | NA07055 | Female | Caucasian | 70 Years | Health |
| NA10863 | DNA | NA10863 | Female | Caucasian | 43 Years | Health |
| NA10855 | DNA | NA10855 | Female | Caucasian | 37 Years | Health |
| NA10854 | DNA | NA10854 | Female | Caucasian | 42 Years | Health |
| NA11882 | DNA | NA11882 | Female | Caucasian | 61 Years | Health |
| NA07019 | DNA | NA07019 | Female | Caucasian | 45 Years | Health |
| NA12717 | DNA | NA12717 | Female | Caucasian | Health | |
| NA12707 | DNA | NA12707 | Male | Caucasian | Health | |
| NA10835 | DNA | NA10835 | Male | Caucasian | 39 Years | Health |
| NA12873 | DNA | NA12873 | Female | Caucasian | Health | |
| NA18503 | DNA | NA18503 | Male | Health | ||
| NA18507 | DNA | NA18507 | Male | Health | ||
| NA07056 | DNA | NA07056 | Female | Caucasian | 65 Years | Health |
| NA12875 | DNA | NA12875 | Female | Caucasian | Health | |
| NA10861 | DNA | NA10861 | Female | Caucasian | 49 Years | Health |
| NA10846 | DNA | NA10846 | Male | Caucasian | 43 Years | Health |
| NA12750 | DNA | NA12750 | Male | Caucasian | Health | |
| NA12802 | DNA | NA12802 | Female | Caucasian | Health | |
| NA07000 | DNA | NA07000 | Female | Caucasian | 66 Years | Health |
| NA12740 | DNA | NA12740 | Female | Caucasian | Health | |
| NA11832 | DNA | NA11832 | Female | Caucasian | 58 Years | Health |
| NA12239 | DNA | NA12239 | Female | Caucasian | 61 Years | Health |
| NA18504 | DNA | NA18504 | Male | Health | ||
| NA18515 | DNA | NA18515 | Male | Health |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | BAC aCGH | Probe signal intensity | Agilent | 18,735 |
| 2 | Discovery | SNP array | SNP genotyping analysis | Affymetrix GeneChip Early Access Mapping 500K Set Array (250K_Nsp_SNP), Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP) | 6,458 |