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Organizing biological data
gut bacteria
human gut bacterial isolate genomes Genome sequencing and assembly
beneficial gut commensal bacterial species from DFI for consortia
Weaning accelerates and transforms within-host adaptation in the infant gut microbiome
Metagenomes and metatranscriptomes from tetrachloroethene-dechlorinating consortium SDC-9 growing in the presence and absence of biochar
Functional host-specific adaptation of the intestinal microbiome in hominids
cultivated from goat feces or anaerobic digester sludge
cultivated microbial species from anaerobic digester sludge and goat feces
Human intestinal Bacterial Collection (HiBC)
EMG produced TPA metagenomics assembly of PRJNA769968 data set (Probiotic consumption relieved Parkinson's disease via modulating the gut microbiota and neuroactive compounds).
EMG produced TPA metagenomics assembly of PRJEB55713 data set (Child gut microbiome).
EMG produced TPA metagenomics assembly of PRJNA832737 data set (gut metagenome of subjects with GID upon milk consumption).
EMG produced TPA metagenomics assembly of PRJEB52748 data set (Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides).
Lachnospiraceae
Clostridium clostridioforme and Clostridium symbiosum genome sequences. Genome sequencing and assembly
EMG produced TPA metagenomics assembly of PRJNA812410 data set (Quantifying the impact of gut microbiota on inflammation and hypertensive organ damage).
EMG produced TPA metagenomics assembly of PRJNA799796 data set (Mouse fecal sample Raw sequence reads).
EMG produced TPA metagenomics assembly of PRJNA703330 data set (Rationally designed bacterial consortia to treat chronic immune-mediated colitis and restore intestinal homeostasis).
Genomic landscape of the expanded reference genomes for cultivated bacteria from human gut
Human gut microbiota Genome sequencing and assembly
Mouse Intestinal Bacteria Collection
EMG produced TPA metagenomics assembly of PRJEB15296 data set (Structure and function of the fecal microbiota in diarrhoeic neonatal piglets).
EMG produced TPA metagenomics assembly of PRJEB19642 data set (Metagenomic analysis of gut microbiota in sows and piglets (EBI)).
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