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Sample GSM105446 Query DataSets for GSM105446
Status Public on Jan 03, 2007
Title rpoH mt vs wt_heat shock (15-37ºC) Exp2.1
Sample type RNA
 
Channel 1
Source name wild-type 37ºC
Organism Vibrio cholerae
Characteristics Vibrio cholerae El Tor N16961, heat shock 20 min, 15ºC to 37ºC
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name rpoH 37ºC
Organism Vibrio cholerae
Characteristics Vibrio cholerae El Tor N16961, heat shock 20 min, 15ºC to 37ºC
Extracted molecule total RNA
Label Cy5
 
 
Description Vibrio cholerae El Tor N16961 total mRNA, heat shock for 20 min from 15ºC to 37ºC
Data processing Intensity dependent normalization per spot and per chip, Lowess algorithm
 
Submission date Apr 14, 2006
Last update date Jan 03, 2007
Contact name Leyla Slamti
E-mail(s) leyla.slamti@tufts.edu
Organization name Tufts University/HHMI
Department Molecular biology and microbiology
Lab M. K. Waldor
Street address 136 Harrison Ave
City Boston
State/province MA
ZIP/Postal code 02111
Country USA
 
Platform ID GPL3651
Series (1)
GSE6097 Transcriptional analysis of a Vibrio choleare rpoH mutant vs wild-type after a heat-shock

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
RAW Raw values of signal intensity in the mutant vs wt strain
PRE_VALUE Normalized values of signal intensity in the mutant vs wt strain

Data table
ID_REF VALUE RAW PRE_VALUE
gfp:POS_6 0.0158 176814 1.011
gfp:POS_6.1 0.0384 701176 1.027
gfp:POS_7 0.0172 145569 1.012
gfp:POS_7.1 0.3092 510988 1.239
GI_12057212:1000710-1001906 1.9920 905617 3.978
GI_12057212:1001910-1002437 1.8424 605185 3.586
GI_12057212:1002462-1004675 0.6790 765722 1.601
GI_12057212:1004672-1005379 2.4594 55 5.5
GI_12057212:1005358-1005792 0.1283 834499 1.093
GI_12057212:1006823-1008130 0.0718 7046677 1.051
GI_12057212:100811-101854 -0.0116 4098258 0.992
GI_12057212:1010912-1011079 0.0129 66617 1.009
GI_12057212:101958-102389 -0.0908 273566 0.939
GI_12057212:1021527-1021997 -0.6304 266632 0.646
GI_12057212:1027836-1029029 0.0813 1478548 1.058
GI_12057212:103098-105902 0.0635 2577670 1.045
GI_12057212:1034243-1035118 0.1164 3094714 1.084
GI_12057212:1035251-1037260 -0.0740 405012 0.95
GI_12057212:1037891-1038940 -0.1795 504597 0.883
GI_12057212:1039017-1039832 -0.1779 281468 0.884

Total number of rows: 3997

Table truncated, full table size 187 Kbytes.




Supplementary file Size Download File type/resource
GSM105446_Exp2_1.txt.gz 499.5 Kb (ftp)(http) TXT

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