NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM105444 Query DataSets for GSM105444
Status Public on Jan 03, 2007
Title rpoH mt vs wt_heat shock (15-37ºC) Exp1.1
Sample type RNA
 
Channel 1
Source name wild-type 37ºC
Organism Vibrio cholerae
Characteristics Vibrio cholerae El Tor N16961, heat shock 20 min, 15ºC to 37ºC
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name rpoH 37ºC
Organism Vibrio cholerae
Characteristics Vibrio cholerae El Tor N16961, heat shock 20 min, 15ºC to 37ºC
Extracted molecule total RNA
Label Cy5
 
 
Description Vibrio cholerae El Tor N16961 total mRNA, heat shock for 20 min from 15ºC to 37ºC
Data processing Intensity dependent normalization per spot and per chip, Lowess algorithm
 
Submission date Apr 14, 2006
Last update date Jan 03, 2007
Contact name Leyla Slamti
E-mail(s) leyla.slamti@tufts.edu
Organization name Tufts University/HHMI
Department Molecular biology and microbiology
Lab M. K. Waldor
Street address 136 Harrison Ave
City Boston
State/province MA
ZIP/Postal code 02111
Country USA
 
Platform ID GPL3651
Series (1)
GSE6097 Transcriptional analysis of a Vibrio choleare rpoH mutant vs wild-type after a heat-shock

Data table header descriptions
ID_REF
VALUE log2 of PRE_VALUE
RAW Raw values of signal intensity in the mutant vs wt strain
PRE_VALUE Normalized values of signal intensity in the mutant vs wt strain

Data table
ID_REF VALUE RAW PRE_VALUE
gfp:POS_6 0.1164 25791 1.084
gfp:POS_6.1 0.8891 486360 1.852
gfp:POS_7 4.5632 1951 23.64
gfp:POS_7.1 2.1362 180384 4.396
GI_12057212:1000710-1001906 15.4787 456628 45663
GI_12057212:1001910-1002437 2.1731 503611 4.51
GI_12057212:1002462-1004675 1.0759 490370 2.108
GI_12057212:1004672-1005379 0.7740 782072 1.71
GI_12057212:1005358-1005792 0.3962 651548 1.316
GI_12057212:1006823-1008130 0.1454 5604929 1.106
GI_12057212:100811-101854 -0.0664 982149 0.955
GI_12057212:1010912-1011079 -1.0923 47727 0.469
GI_12057212:101958-102389 0.5460 130178 1.46
GI_12057212:1021527-1021997 -0.4383 89864 0.738
GI_12057212:1027836-1029029 0.1336 504764 1.097
GI_12057212:103098-105902 -0.0029 1526598 0.998
GI_12057212:1034243-1035118 0.0909 1821695 1.065
GI_12057212:1035251-1037260 0.0854 132517 1.061
GI_12057212:1037891-1038940 0.4190 431929 1.337
GI_12057212:1039017-1039832 -1.2176 17616 0.43

Total number of rows: 3997

Table truncated, full table size 185 Kbytes.




Supplementary file Size Download File type/resource
GSM105444_Exp1_1.txt.gz 494.8 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap