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Status
Public on Nov 01, 2011
Title
Culex quinquefasciatus genome array annotation 1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Culex quinquefasciatus Manufacturer
Agilent Technologies
Manufacture protocol
Agilent Technologies
Support
glass
Coating
other
Description
Array Designer 4.2 software (Premier Biosoft International) was used to design a core set of 57- to 60-mer oligonucleotides for all predicted C. quinquefasciatus transcripts according to the software developer's instructions. Oligonucleotides were complementary to regions within 1 kb of the 3' UTR of transcripts and had a minimal sequence identity overlap with non-target transcript sequences. Glass slide oligonucleotide microarrays were constructed by Agilent Technologies (www.agilent.com).
Contributor(s)
Dimopoulos G Submission date
Jul 20, 2010
Last update date
Nov 01, 2011
Contact name
George Dimopoulos
E-mail(s)
gdimopo1@jhu.edu Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Samples (28)
GSM568663 , GSM568664 , GSM568665 , GSM568666 , GSM568667 , GSM568668
GSM568669 ,
GSM568670 ,
GSM568671 ,
GSM568672 ,
GSM568673 ,
GSM568674 ,
GSM568675 ,
GSM568676 ,
GSM568677 ,
GSM568678 ,
GSM2544876 ,
GSM2544877 ,
GSM2544878 ,
GSM2544879 ,
GSM2544880 ,
GSM2544881 ,
GSM2544882 ,
GSM2544883 ,
GSM2544884 ,
GSM2544885 ,
GSM2544886 ,
GSM2544887 Series (2)
GSE23045 Analysis of Culex quinquefasciatus responses to WNV infection
GSE96838 Midgut transcriptome of Culex quinquefasciatus larvae treated with LC90 doses of Bin toxin from Lysinibacillus sphaericus
Data table header descriptions ID CP_ID IDs that include the CP transcript ID and also provide information on oligo design
SEQUENCE Oligonucleotide sequence
Data table ID CP_ID SEQUENCE 913
bCPdoubCPIJ000001
CAAGGTGAACGACTACGAACAGGAGCTGCTGAAGAAGGTTATTCCGAAGCTGATAAA
28215
bCPdoubCPIJ000002
AAACAAAGACAGAAACAAACTTCCTGTGGTGATAGCATAGATAATCATTCCAATCGG
3504
bCPdoubCPIJ000003
GTGGAGATCGACGGTGTGGTCAGTGAAGAACATCTTACGGTGCAACAAGTGTTGAAG
41799
bCPdoubCPIJ000004
AAATAAGATTTACGAGTTTCTGTATCATCTGTACAATCACGCTAAGATACCAGACAAA
1390
bCPdoubCPIJ000005
GAGGGAGTACATTGAGTACATCACGACTTATTTGAACGATAGCCACAAGTTTAGAAC
12352
bCPdoubCPIJ000006
TTAAAGACTTCCAACTTTTCCTTTTCCAACCTTGCTACCACCGAGTACAACGAGAATAA
44328
bCPdoubCPIJ000007
TTACAACGAGATTTGTGAACGCAAGCTGACTGGAACGTGGAAAGAAGTGTTTGACAA
32660
bCPdoubCPIJ000008
GAATGTTCTGGTCGATTGAAACCGATGACTTTCTGGGAAAATGTGGTCCTAAATTTG
13685
bCPdoubCPIJ000009
GGATTGTATTTTGATCTTTCGATACTAAGCTGTAACTATCCAGAAAGGGTAGAATGT
40120
bCPdoubCPIJ000010
CCCCATCTGGTTGATTGTGATTTGTGATTTAAAATTGATTCTTTGTGTTCTATTTGAAAT
29391
bCPdoubCPIJ000011
CTTTATCAACAATGGGGTGCCCTCTCGTTATCGTTCAACATCTGTCTGCTGTTTGTG
43404
bCPdoubCPIJ000012
GTTGGGTTTTCAGGGTCTCCTAATATCCGAACCTTCTAGTGATATGCCCTCAATTAC
44805
bCPdoubCPIJ000012
GTTGGGTTTTCAGGGTCTCCTAATATCCGAACCTTCTAGTGATATGCCCTCAATTAC
33816
bCPdoubCPIJ000013
CAACAGTAATAGTTTGCCGGTGCCTATGCTGGCGGAGTTCTACAAGGAAGAGCAACT
17398
bCPdoubCPIJ000014
GAAGTTCCCGATGAACGGCAAGGCACTCTGCCTGATGAGTCTGGACATGTATCTCAG
6072
bCPdoubCPIJ000015
AAACTCCCTTCCTCAAGTTCAACAAATCCTCCAAAATGCCAATCTTCTCCCTCGAAA
10592
bCPdoubCPIJ000016
CGAAGGAGAGTGATGTTATGCTTTATCGACGAATTTTACAGTGTATTTTCATTCCAG
42310
bCPdoubCPIJ000017
GAGTGAAGTTGGTGAAGCTAAAGAGAATAATAATGGTGAAGTTGAAGACGACGACGA
36290
bCPdoubCPIJ000018
AAATCACATCATCGAAGAACACCTTCAACAATACGGGGAGATAATCTCAATCCACAA
37019
bCPdoubCPIJ000019
GAAGTGTCCTTAATCATCAACCAAGACAACATCAGTCTCTTTCTCCATCTGCCGATC
43803 3304 Kbytes .Supplementary data files not provided
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