4D6U: Cytochrome bc1 bound to the 4(1H)-pyridone GSK932121

PDB ID: 4D6UDownload
MMDB ID: 125980
PDB Deposition Date: 2014/11/14
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 4.09  Å
Source Organism:
Similar Structures:
Biological Unit for 4D6U: decameric; determined by software (PQS)
Molecular Components in 4D6U
Label Count Molecule
Proteins (10 molecules)
1
Cytochrome B-c1 Complex Subunit 1, Mitochondrial
(Gene symbol: UQCRC1)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 2, Mitochondrial
(Gene symbol: UQCRC2)
Molecule annotation
1
Cytochrome B
(Gene symbol: CYTB)
Molecule annotation
1
Cytochrome C1, Heme Protein, Mitochondrial
(Gene symbol: CYC1)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
(Gene symbol: UQCRFS1)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 7
(Gene symbol: UQCRB)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 8
(Gene symbol: UQCRQ)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 6, Mitochondrial
(Gene symbol: UQCRH)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 9
(Gene symbol: UQCR10)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
2
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
2
1
3-chloro-6-(hydroxymethyl)-2-methyl-5-{4-[3-(trifluoromethoxy)phenoxy]phenyl}pyridin-4-ol3-chloro-6-(hydroxymethyl)-2-methyl-5-{4-[3-(trifluoromethoxy)phenoxy]phenyl}pyridin-4-ol
3
7
PHOSPHATE IONPHOSPHATE ION
4
2
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
5
1
HEME CHEME C
6
2
CARDIOLIPINCARDIOLIPIN
7
1
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303