8DX3: HIV-1 reverse transcriptase/rilpivirine with bound fragment 3-bromobenzylamine in the thumb subdomain

PDB ID: 8DX3Download
MMDB ID: 230847
PDB Deposition Date: 2022/8/2
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.06  Å
Source Organism:
Human immunodeficiency virus type 1 BH10▼
Similar Structures:
Biological Unit for 8DX3: dimeric; determined by author and by software (PISA)
Molecular Components in 8DX3
Label Count Molecule
Proteins (2 molecules)
1
Reverse Transcriptase/ribonuclease H
Molecule annotation
1
P51 RT
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
1
1-(3-bromophenyl)methanamine1-(3-bromophenyl)methanamine
2
1
4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile
3
9
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
4
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
MAGNESIUM IONMAGNESIUM ION
6
3
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303