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7A5J: Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs

PDB ID:

7A5J Download

MMDB ID:

227896

PDB Deposition Date:

2020/8/21

Updated in MMDB:

2023/03

Experimental Method:

electron microscopy

Resolution:

3.1 Å

Source Organism:

Thermus thermophilus HB27▼

Taxonomy	Molecule
Thermus thermophilus HB27	n
Homo sapiens	D, E, F, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, a, b , c, d, e, f, g, h, i, j, k, l, m, o, p, q, r, s, t, u, v, w, A, B, Y2, C, G, y, z, x

Similar Structures:

Biological Unit for 7A5J: 63-meric; determined by author

Molecular Components in 7A5J
Label	Count	Molecule
Proteins (59 molecules)
D	1	39S Ribosomal Protein L2, Mitochondrial
E	1	39S Ribosomal Protein L3, Mitochondrial
F	1	39S Ribosomal Protein L4, Mitochondrial
H C	2	39S Ribosomal Protein L9, Mitochondrial
I	1	39S Ribosomal Protein L10, Mitochondrial
J	1	39S Ribosomal Protein L11, Mitochondrial
K	1	39S Ribosomal Protein L13, Mitochondrial
L	1	39S Ribosomal Protein L14, Mitochondrial
M	1	39S Ribosomal Protein L15, Mitochondrial
N	1	39S Ribosomal Protein L16, Mitochondrial
O	1	39S Ribosomal Protein L17, Mitochondrial
P	1	Mitochondrial Ribosomal Protein L18, Isoform Cra_b
Q	1	39S Ribosomal Protein L19, Mitochondrial
R	1	39S Ribosomal Protein L20, Mitochondrial
S	1	39S Ribosomal Protein L21, Mitochondrial
T	1	39S Ribosomal Protein L22, Mitochondrial
U	1	39S Ribosomal Protein L23, Mitochondrial
V	1	39S Ribosomal Protein L24, Mitochondrial
W	1	39S Ribosomal Protein L27, Mitochondrial
X	1	39S Ribosomal Protein L28, Mitochondrial
Y	1	39S Ribosomal Protein L47, Mitochondrial
Z	1	39S Ribosomal Protein L30, Mitochondrial
0	1	39S Ribosomal Protein L32, Mitochondrial
1	1	39S Ribosomal Protein L33, Mitochondrial
2	1	39S Ribosomal Protein L34, Mitochondrial
3	1	39S Ribosomal Protein L35, Mitochondrial
4	1	39S Ribosomal Protein L36, Mitochondrial
5	1	39S Ribosomal Protein L37, Mitochondrial
6	1	39S Ribosomal Protein L38, Mitochondrial
7	1	39S Ribosomal Protein L39, Mitochondrial
8	1	39S Ribosomal Protein L40, Mitochondrial
9	1	39S Ribosomal Protein L41, Mitochondrial
a	1	39S Ribosomal Protein L42, Mitochondrial
b	1	39S Ribosomal Protein L43, Mitochondrial
c	1	39S Ribosomal Protein L44, Mitochondrial
d	1	39S Ribosomal Protein L45, Mitochondrial
e	1	39S Ribosomal Protein L46, Mitochondrial
f	1	39S Ribosomal Protein L48, Mitochondrial
g	1	39S Ribosomal Protein L49, Mitochondrial
h	1	39S Ribosomal Protein L50, Mitochondrial
i	1	39S Ribosomal Protein L51, Mitochondrial
j	1	Cdna Flj76418, Highly Similar to Homo Sapiens Mitochondrial Ribosomal Protein L52 (Mrpl52), Transcript Variant 1, mRNA
k	1	39S Ribosomal Protein L53, Mitochondrial
l	1	39S Ribosomal Protein L54, Mitochondrial
m	1	39S Ribosomal Protein L55, Mitochondrial
o	1	Ribosomal Protein 63, Mitochondrial
p	1	Peptidyl-trna Hydrolase Ict1, Mitochondrial
q	1	Growth Arrest and DNA Damage-inducible Proteins-interacting Protein 1
r	1	39S Ribosomal Protein S18a, Mitochondrial
s	1	39S Ribosomal Protein S30, Mitochondrial
t	1	Unknown Protein/protein Extension
u	1	Mitochondrial Assembly of Ribosomal Large Subunit Protein 1
v	1	Mief1 Upstream Open Reading Frame Protein
w	1	Acyl Carrier Protein, Mitochondrial
n	1	50S Ribosomal Protein L1
Y2	1	Nascent Chain
y	1	Unknown Protein/protein Extension
z	1	Unknown Protein/protein Extension
Nucleotides(4 molecules)
A	1	16S rRNA
B	1	Mt-trnaval
G x	2	Mt-trna
Chemicals and Non-standard biopolymers (101 molecules)
1	92	MAGNESIUM ION
2	3	ZINC ION
3	2	CHLORIDE ION
4	4	SODIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303