5OKD: Crystal structure of bovine Cytochrome bc1 in complex with inhibitor SCR0911

PDB ID: 5OKDDownload
MMDB ID: 159583
PDB Deposition Date: 2017/7/25
Updated in MMDB: 2018/06
Experimental Method:
x-ray diffraction
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 5OKD: decameric; determined by author and by software (PISA)
Molecular Components in 5OKD
Label Count Molecule
Proteins (10 molecules)
1
Cytochrome B-c1 Complex Subunit 1, Mitochondrial
(Gene symbol: UQCRC1)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 2, Mitochondrial
(Gene symbol: UQCRC2)
Molecule annotation
1
Cytochrome B
(Gene symbol: CYTB)
Molecule annotation
1
Cytochrome C1, Heme Protein, Mitochondrial
(Gene symbol: CYC1)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
(Gene symbol: UQCRFS1)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 7
(Gene symbol: UQCRB)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 8
(Gene symbol: UQCRQ)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 6, Mitochondrial
(Gene symbol: UQCRH)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
(Gene symbol: UQCRFS1)
Molecule annotation
1
Cytochrome B-c1 Complex Subunit 9
(Gene symbol: UQCR10)
Molecule annotation
Chemicals and Non-standard biopolymers (23 molecules)
1
3
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
2
1
1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
3
4
CARDIOLIPINCARDIOLIPIN
4
2
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
5
1
7-methoxy-3-methyl-2-[5-[4-(trifluoromethyloxy)phenyl]pyridin-3-yl]-1~{H}-quinolin-4-one7-methoxy-3-methyl-2-[5-[4-(trifluoromethyloxy)phenyl]pyridin-3-yl]-1~{H}-quinolin-4-one
6
1
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
7
2
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
8
1
HEME CHEME C
9
6
PHOSPHATE IONPHOSPHATE ION
10
1
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
11
1
1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303