National Center for
Biotechnology Information

6YP7: PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions

PDB ID:	6YP7 Download
MMDB ID:	195621
PDB Deposition Date:	2020/4/15
Updated in MMDB:	2020/12
Experimental Method:	electron microscopy
Resolution:	3.8 Å
Source Organism:	Pisum sativum
Similar Structures:

Biological Unit for 6YP7: 44-meric; determined by author

Molecular Components in 6YP7
Label	Count	Molecule
Proteins (44 molecules)
g n y G N Y	6	Chlorophyll A-B Binding Protein 8, Chloroplastic
a A	2	Photosystem II Protein D1 (Gene symbol: psbA)
b B	2	Photosystem II Cp47 Reaction Center Protein (Gene symbol: psbB)
c C	2	Photosystem II Cp43 Reaction Center Protein (Gene symbol: psbC)
d D	2	Photosystem II D2 Protein (Gene symbol: psbD)
e E	2	Cytochrome B559 Subunit Alpha (Gene symbol: psbE)
f F	2	Cytochrome B559 Subunit Beta (Gene symbol: psbF)
h H	2	Photosystem II Reaction Center Protein H (Gene symbol: psbH)
i I	2	Photosystem II Reaction Center Protein I (Gene symbol: psbI)
j J	2	Photosystem II Reaction Center Protein J (Gene symbol: psbJ)
k K	2	Photosystem II Reaction Center Protein K (Gene symbol: psbK)
l L	2	Photosystem II Reaction Center Protein L (Gene symbol: psbL)
m M	2	Photosystem II Reaction Center Protein M (Gene symbol: psbM)
o O	2	Oxygen-evolving Enhancer Protein 1, Chloroplastic
t T	2	Photosystem II Reaction Center Protein T (Gene symbol: psbT)
w W	2	Photosystem II Reaction Center Protein W
x X	2	Ultraviolet-b-repressible Protein
z Z	2	Photosystem II Reaction Center Protein Z (Gene symbol: psbZ)
r R	2	Light Harvesting Chlorophyll A/b-binding Protein Lhcb4.3
s S	2	Light Harvesting Chlorophyll A/b-binding Protein Lhcb5, Cp26
Chemicals and Non-standard biopolymers (325 molecules)
1	48	CHLOROPHYLL B
2	150	CHLOROPHYLL A
3	12	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
4	8	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
5	7	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
6	26	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
7	2	CA-MN4-O5 CLUSTER
8	2	FE (II) ION
9	4	CHLORIDE ION
10	4	PHEOPHYTIN A
11	22	BETA-CAROTENE
12	4	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
13	8	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
14	2	BICARBONATE ION
15	10	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
16	14	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
17	2	PROTOPORPHYRIN IX CONTAINING FE