6EM1: State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

PDB ID: 6EM1Download
MMDB ID: 171510
PDB Deposition Date: 2017/10/1
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 3.6  Å
Source Organism:
Similar Structures:
Biological Unit for 6EM1: 43-meric; determined by author and by software (PISA)
Molecular Components in 6EM1
Label Count Molecule
Proteins (40 molecules)
1
Ribosome Production Factor 1
Molecule annotation
1
60S Ribosomal Protein L7-a
Molecule annotation
1
Protein Mak16
Molecule annotation
1
Ribosomal RNA-processing Protein 1
Molecule annotation
1
Ribosome Biogenesis Protein Nsa1
Molecule annotation
1
Ribosome Biogenesis Protein Brx1
Molecule annotation
1
Nucleolar Gtp-binding Protein 1
Molecule annotation
1
rRNA-processing Protein Ebp2
Molecule annotation
1
Ribosome Biogenesis Protein Nsa2
Molecule annotation
1
Nuclear Gtp-binding Protein Nug1
Molecule annotation
1
Ribosome Biogenesis Protein Rlp24
Molecule annotation
1
Nucleolar Protein 16
Molecule annotation
1
Ribosome Assembly Factor Mrt4
Molecule annotation
1
Eukaryotic Translation Initiation Factor 6
Molecule annotation
1
Upf0642 Protein Ybl028c
Molecule annotation
1
60S Ribosomal Protein L3
Molecule annotation
1
60S Ribosomal Protein L4-a
Molecule annotation
1
60S Ribosomal Protein L32
Molecule annotation
1
60S Ribosomal Protein L6-a
Molecule annotation
1
60S Ribosomal Protein L33-a
Molecule annotation
1
60S Ribosomal Protein L8-a
Molecule annotation
1
60S Ribosomal Protein L35-a
Molecule annotation
1
60S Ribosomal Protein L9-a
Molecule annotation
1
60S Ribosomal Protein L36-b
Molecule annotation
1
60S Ribosomal Protein L37-a
Molecule annotation
1
60S Ribosomal Protein L13-a
Molecule annotation
1
60S Ribosomal Protein L14-a
Molecule annotation
1
60S Ribosomal Protein L15-a
Molecule annotation
1
60S Ribosomal Protein L16-a
Molecule annotation
1
60S Ribosomal Protein L17-a
Molecule annotation
1
60S Ribosomal Protein L18-a
Molecule annotation
1
60S Ribosomal Protein L20-a
Molecule annotation
1
60S Ribosomal Protein L23-a
Molecule annotation
1
60S Ribosomal Protein L26-a
Molecule annotation
1
Proteasome-interacting Protein Cic1
Molecule annotation
1
Ribosome Biogenesis Protein Erb1
Molecule annotation
1
Atp-dependent RNA Helicase Has1
Molecule annotation
1
Ribosome Biogenesis Protein 15
Molecule annotation
1
Pescadillo Homolog
Molecule annotation
1
Ribosome Biogenesis Protein Rlp7
Molecule annotation
Nucleotides(3 molecules)
1
25S Ribosomal RNA
Molecule annotation
1
5.8s Ribosomal RNA
Molecule annotation
1
5.8s Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
2
ZINC ION (Link to PubChem not yet available)ZINC ION
* Click molecule labels to explore molecular sequence information.

Citing MMDB