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SRX20273560: GSM7312274: P1_B06_S18, HCT116, Uninfected, plexWell; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 10.1M spots, 1.2G bases, 396.2Mb downloads

External Id: GSM7312274_r1
Submitted by: Cancer Data Science Laboratory, National Cancer Institute, National Institutes of Health
Study: scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations
show Abstracthide Abstract
We profiled cell lines (HCT116, THP1 and Jurkat T) exposed to heat-killed and live Fusobacterium nucleatum using multiple scRNA-seq technologies Overall design: We profiled cell lines (HCT116, THP1 and Jurkat T) exposed to heat-killed and live Fusobacterium nucleatum using multiple scRNA-seq technologies
Sample: P1_B06_S18, HCT116, Uninfected, plexWell
SAMN35015910 • SRS17601298 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7312274
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: cDNA
Layout: PAIRED
Construction protocol: Single cell suspensions were prepared and sorted on a BD FACS Aria IIU into 96 well PCR plates that were prepared with lysis buffer according to seqWell plexWell Rapid Single Cell method (user guide v20210402) and containing ERCC spike-in mix (Invitrogen # 4456740) at a dilution of 1:1E7. Following deposition of single cells into prepared plates, they were snap-frozen and stored at -80C until further processing. Single cell cDNA and libraries were generated for each sorted sample according to seqWell plexWell Rapid Single Cell user guide. Multiplexed libraries containing indexed single cell RNA-Seq libraries were sequenced on the either the NextSeq 2000 or NovaSeq 6000 with a target read depth of 2 million reads per cell using the following read parameters: Read 1 61bp, Index 1 8bp, Index 2 8bp, Read 2 61bp.
Runs: 1 run, 10.1M spots, 1.2G bases, 396.2Mb
Run# of Spots# of BasesSizePublished
SRR2448808210,114,0301.2G396.2Mb2023-05-23

ID:
27694493

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