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Accession: PRJNA970826 ID: 970826

scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations (human)

See Genome Information for Homo sapiens
We profiled cell lines (HCT116, THP1 and Jurkat T) exposed to heat-killed and live Fusobacterium nucleatum using multiple scRNA-seq technologies Overall design: We profiled cell lines (HCT116, THP1 and Jurkat T) exposed to heat-killed and live Fusobacterium nucleatum using multiple scRNA-seq technologies
AccessionPRJNA970826; GEO: GSE232107
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsRobinson W et al., "Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes.", Sci Adv, 2024 Jul 5;10(27):eadj7402
SubmissionRegistration date: 9-May-2023
Cancer Data Science Laboratory, National Cancer Institute, National Institutes of Health
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments184
Publications
PubMed1
PMC1
Other datasets
BioSample184
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes392
SRA Data Details
ParameterValue
Data volume, Gbases372
Data volume, Tbytes0.12

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