GSM5468948: U16: upstream12; Pimephales promelas; RNA-Seq - SRA

SRX11533789: GSM5468948: U16: upstream12; Pimephales promelas; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 28.1M spots, 8.4G bases, 2.5Gb downloads

Submitted by: NCBI (GEO)

Study: RNA-seq reveals potential gene biomarkers in Pimephales promelas for exposure to treated wastewater effluent

PRJNA749280 • SRP329620 • All experiments • All runs

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We investigated the impacts of wastewater effluent exposure on gene expression in adult fathead minnows, a freshwater fish commonly used as an ecotoxicological model. Overall design: Examination of upstream and downstream effluent exposure on gene transcription

Sample: U16: upstream12

SAMN20360837 • SRS9571075 • All experiments • All runs

Organism: Pimephales promelas

Library:

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Brain tissues were homogenized in TRIzol and RNA-purified using the Direct-zol RNA MiniPrep (Zymo Research, R2051). RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM5468948

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 28.1M spots, 8.4G bases, 2.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR15227867	28,126,354	8.4G	2.5Gb	2022-11-10

ID:: 15445938

SRA

Sequence Read Archive

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