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Accession: PRJNA749280 ID: 749280

RNA-seq reveals potential gene biomarkers in Pimephales promelas for exposure to treated wastewater effluent (fathead minnow)

See Genome Information for Pimephales promelas
We investigated the impacts of wastewater effluent exposure on gene expression in adult fathead minnows, a freshwater fish commonly used as an ecotoxicological model. Overall design: Examination of upstream and downstream effluent exposure on gene transcription
AccessionPRJNA749280; GEO: GSE180719
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismPimephales promelas[Taxonomy ID: 90988]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales; Pimephales promelas
PublicationsSchumann PG et al., "RNA-seq reveals potential gene biomarkers in fathead minnows (Pimephales promelas) for exposure to treated wastewater effluent.", Environ Sci Process Impacts, 2022 Oct 19;24(10):1708-1724
SubmissionRegistration date: 23-Jul-2021
University of Wisconsin - Milwaukee
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments64
Publications
PubMed1
Other datasets
BioSample64
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes137
SRA Data Details
ParameterValue
Data volume, Gbases1,033
Data volume, Tbytes0.33

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