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SRX11185120: GSM5393000: SHR36 carotid body left; Rattus norvegicus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 15M spots, 2.3G bases, 878.4Mb downloads

Submitted by: NCBI (GEO)
Study: Glucagon-like peptide-1 suppresses sympathetic activation via peripheral chemosensory inhibition
show Abstracthide Abstract
In order to investigate the molecular basis of carotid body chemoreceptor sensitisation in the Spontaneously Hypertensive Rat (SHR) we have sequenced the transcriptomes of bilateral carotid body samples from aged-matched, male SHR and control Wistar-Kyoto rats. Overall design: Bilateral (right and left) carotid body samples of n=6 individual SHR/NHsd and WKY/NHsd (male, 12-14 weeks old) rats were microdissected from common carotid artery bifurcations following intracardial perfusion with ice-cold PBS. Total RNA was isolated using phenol-chloroform phase seperation method and Zymo Directzol RNA Microprep kit. Average RNA Integrity Number (RIN) of samples processed for sequencing (n=24) was 7.67. Poly-A enriched sequencing libraries were constructed using TruSeq® Stranded mRNA library preparation kit (20020594, Illumina). Libraries were pooled and sequenced on Illumina NextSeq500 platform using NextSeq 500/550 High Output v2.5 (150 Cycles) Kit (20024907; Illumina) on a paired-end multiplex mode.
Sample: SHR36 carotid body left
SAMN19789170 • SRS9242448 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Animals were euthanised with pentobarbital sodium (euthatal) and intracardially perfused with ice-cold PBS. Carotid bodies were excised from the common carotid artery bifurcation under the dissecting microscope and immediately snap-frozen in liquid nitrogen. Tissue was homogenized using QIAzol lysis reagent. Total RNA was extracted using phenol:chloroform phase separation method and isolated using ZYMO direct-zol RNA microprep kit following manufacturers instructions. Illumina TruSeq® Stranded mRNA library preparation kit (20020594, Illumina)
Experiment attributes:
GEO Accession: GSM5393000
Links:
Runs: 1 run, 15M spots, 2.3G bases, 878.4Mb
Run# of Spots# of BasesSizePublished
SRR1486753614,989,7932.3G878.4Mb2022-01-12

ID:
14908908

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