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SRX1796683: Tallahassee WWTP timepoint 1
1 ILLUMINA (Illumina MiSeq) run: 3.9M spots, 1.2G bases, 636.1Mb downloads

Design: Genomes rolling circle amplified, library preps conducted using Illumina kits.
Submitted by: Florida State University
Study: wastewater metagenome Metagenomic assembly
show Abstracthide Abstract
This study sought to isolate and sequence single-stranded DNA viruses with circular genomes from a wastewater treatment plant in Tallahassee, Florida. Wastewater treatment plants collect viruses from the surrounding environment and from the human waste sent to them. By sampling the viruses in the plant this study is able to get a snapshot of the ssDNA viruses in the Tallahassee area around the time of collection. There are several notable agricultural viruses with circular ssDNA genomes, making the genomes recovered by this study of agricultural and environmental interest. Additionally, the model virus system Microviridae (specifically PhiX174) has a ssDNA genome and this study aimed to gain insight into the Microviridae present in the system.
Sample:
SAMN05150788 • SRS1464827 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM PCR
Layout: PAIRED
Spot descriptor:
forward151  reverse

Runs: 1 run, 3.9M spots, 1.2G bases, 636.1Mb
Run# of Spots# of BasesSizePublished
SRR35800703,861,5751.2G636.1Mb2016-09-26

ID:
2569494

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